Oxana V. Galzitskaya: search on Z-Library

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1

Stability and rigidity/flexibility—Two sides of the same coin?

Mamonova, Tatyana B., Glyakina, Anna V., Galzitskaya, Oxana V., Kurnikova, Maria G.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2013

Language:

english

File:

PDF, 2.58 MB

english, 2013

2

Amyloid-like properties of Saccharomyces cerevisiae cell wall glucantransferase Bgl2p

Kalebina, Tatyana S., Plotnikova, Tatyana A., Gorkovskii, Anton A., Selyakh, Irina O., Galzitskaya, Oxana V., Bezsonov, Evgeniy E., Gellissen, Gerd, Kulaev, Igor S.

Journal:

Year:

2008

Language:

english

File:

PDF, 641 KB

english, 2008

3

Estimation of Protein Folding Rate from Monte Carlo Simulations and Entropy Capacity

V. Galzitskaya, Oxana

Journal:

Current Protein & Peptide Science

Year:

2010

Language:

english

File:

PDF, 619 KB

english, 2010

4

Insulin and Lispro Insulin: What is Common and Different in their Behavior?

Selivanova, Olga, Suvorina, Mariya, Surin, Alexey, Dovidchenko, Nikita, Galzitskaya, Oxana

Journal:

Current Protein & Peptide Science

Year:

2016

Language:

english

File:

PDF, 2.47 MB

english, 2016

5

Roughness of the globular protein surface: Analysis of high resolution X-ray data

Alexander A. Timchenko, Oxana V. Galzitskaya, Igor N. Serdyuk

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 205 KB

english, 1997

6

Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

Mikhail M. Savitski, Frank Kjeldsen, Michael L. Nielsen, Sergiy O. Garbuzynskiy, Oxana V. Galzitskaya, Alexey K. Surin, Roman A. Zubarev

Journal:

Angewandte Chemie

Year:

2007

Language:

english

File:

PDF, 101 KB

english, 2007

7

Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

Mikhail M. Savitski, Frank Kjeldsen, Michael L. Nielsen, Sergiy O. Garbuzynskiy, Oxana V. Galzitskaya, Alexey K. Surin, Roman A. Zubarev

Journal:

Angewandte Chemie International Edition

Year:

2007

Language:

english

File:

PDF, 102 KB

english, 2007

8

β-Hairpins, α-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal β-hairpin of SH3 domain

Kazuyoshi Ikeda, Oxana V. Galzitskaya, Haruki Nakamura, Junichi Higo

Journal:

Journal of Computational Chemistry

Year:

2003

Language:

english

File:

PDF, 1.08 MB

english, 2003

9

Energy landscape of a β-hairpin peptide in explicit water studied by multicanonical molecular dynamics

Jucichi Higo, Oxana V. Galzitskaya, Satoshi Ono, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2001

Language:

english

File:

PDF, 421 KB

english, 2001

10

Solution conformation of phakellistatin 8 investigated by molecular dynamics simulations

Oxana Galzitskaya, Amedeo Caflisch

Journal:

Journal of Molecular Graphics and Modelling

Year:

1999

Language:

english

File:

PDF, 465 KB

english, 1999

11

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Dmitry N. Ivankov, Alexei V. Finkelstein

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 98 KB

english, 2003

12

Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray- and NMR-resolved protein structures?

Sergiy O. Garbuzynskiy, Bogdan S. Melnik, Michail Yu. Lobanov, Alexei V. Finkelstein, Oxana V. Galzitskaya

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 393 KB

english, 2005

13

Entropy capacity determines protein folding

Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 732 KB

english, 2006

14

More compact protein globules exhibit slower folding rates

Oxana V. Galzitskaya, Danielle C. Reifsnyder, Natalya S. Bogatyreva, Dmitry N. Ivankov, Sergiy O. Garbuzynskiy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 221 KB

english, 2008

15

β-hairpin folds by molecular dynamics simulations

Oxana V. Galzitskaya, Junichi Higo, Masataka Kuroda, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 466 KB

english, 2000

16

To be folded or to be unfolded?

Sergiy O. Garbuzynskiy, Michail Yu. Lobanov, Oxana V. Galzitskaya

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 254 KB

english, 2004

17

Optimal region of average side-chain entropy for fast protein folding

Oxana V. Galzitskaya, Alexei K. Surin, Haruki Nakamura

Journal:

Protein Science

Year:

2000

Language:

english

File:

PDF, 240 KB

english, 2000

18

Geometrical factor and physical reasons for its influence on the kinetic and thermodynamic properties of RNA-like heteropolymers

Oxana V Galzitskaya

Journal:

Folding and Design

Year:

1997

Language:

english

File:

PDF, 143 KB

english, 1997

19

Folding rate dependence on the chain length for RNA-like heteropolymers

Oxana V Galzitskaya, Alexei V Finkelstein

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 163 KB

english, 1998

20

Nucleation-based prediction of the protein folding rate and its correlation with the folding nucleus size

Oxana V. Galzitskaya, Anna V. Glyakina

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

21

Outlining Folding Nuclei in Globular Proteins

Sergiy O. Garbuzynskiy, Alexei V. Finkelstein, Oxana V. Galzitskaya

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.72 MB

english, 2004

22

Folding nuclei in proteins

Oxana V Galzitskaya, Dmitry N Ivankov, Alexei V Finkelstein

Journal:

Year:

2001

Language:

english

File:

PDF, 169 KB

english, 2001

23

Hyperphosphorylation induces structural modification of tau-protein

Vladimir N Uversky, Stefan Winter, Oxana V Galzitskaya, Leonhard Kittler, Gunter Lober

Journal:

Year:

1998

Language:

english

File:

PDF, 145 KB

english, 1998

24

Prediction of protein domain boundaries from sequence alone

Oxana V. Galzitskaya, Bogdan S. Melnik

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 123 KB

english, 2003

25

Amyloidogenic peptides of yeast cell wall glucantransferase Bgl2p as a model for the investigation of its pH-dependent fibril formation

Bezsonov, Evgeny E., Groenning, Minna, Galzitskaya, Oxana V., Gorkovskii, Anton A., Semisotnov, Gennady V., Selyakh, Irina O., Ziganshin, Rustam H., Rekstina, Valentina V., Kudryashova, Irina B., Kuzn

Journal:

Year:

2013

Language:

english

File:

PDF, 1.23 MB

english, 2013

26

FLEXIBILITY AND MOBILITY IN MESOPHILIC AND THERMOPHILIC HOMOLOGOUS PROTEINS FROM MOLECULAR DYNAMICS AND FOLDUNFOLD METHOD

MAMONOVA, TATYANA B., GLYAKINA, ANNA V., KURNIKOVA, MARIA G., GALZITSKAYA, OXANA V.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2010

Language:

english

File:

PDF, 2.04 MB

english, 2010

27

IsUnstruct: prediction of the residue status to be ordered or disordered in the protein chain by a method based on the Ising model

Lobanov, Michail Yu, Sokolovskiy, Igor V., Galzitskaya, Oxana V.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 341 KB

english, 2013

28

Right- and left-handed three-helix proteins. I. Experimental and simulation analysis of differences in folding and structure

Glyakina, Anna V., Pereyaslavets, Leonid B., Galzitskaya, Oxana V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

29

Right- and left-handed three-helix proteins. II. Similarity and differences in mechanical unfolding of proteins

Glyakina, Anna V., Likhachev, Ilya V., Balabaev, Nikolay K., Galzitskaya, Oxana V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

30

Folding of chains with random and edited sequences: similarities and differences

Galzitskaya, Oxana V., Finkelstein, Alexei V.

Journal:

Protein Engineering Design and Selection

Year:

1995

Language:

english

File:

PDF, 2.69 MB

english, 1995

31

An N-terminal, 830 residues intrinsically disordered region of the cytoskeleton-regulatory protein supervillin contains Myosin II- and F-actin-binding sites

Fedechkin, Stanislav O., Brockerman, Jacob, Luna, Elizabeth J., Lobanov, Michail Yu., Galzitskaya, Oxana V., Smirnov, Serge L.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

32

Haloarcula marismortuiarchaellin genes as ecoparalogs

Syutkin, Alexey S., Pyatibratov, Mikhail G., Galzitskaya, Oxana V., Rodríguez-Valera, Francisco, Fedorov, Oleg V.

Journal:

Year:

2014

Language:

english

File:

PDF, 782 KB

english, 2014

33

A Theoretical Search for Folding/Unfolding Nuclei in Three-Dimensional Protein Structures

Oxana V. Galzitskaya and Alexei V. Finkelstein

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.01 MB

english, 1999

34

How to Determine the Size of Folding Nuclei of Protofibrils from the Concentration Dependence of the Rate and Lag-Time of Aggregation. II. Experimental Application for Insulin and LysPro Insulin: Aggregation Morphology, Kinetics, and Sizes of Nuclei

Selivanova, Olga M., Suvorina, Maria Yu., Dovidchenko, Nikita V., Eliseeva, Irina A., Surin, Alexey K., Finkelstein, Alexey V., Schmatchenko, Vadim V., Galzitskaya, Oxana V.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 1.66 MB

english, 2014

35

Folding of Right- and Left-Handed Three-Helix Proteins

Galzitskaya, Oxana V., Pereyaslavets, Leonid B., Glyakina, Anna V.

Journal:

Israel Journal of Chemistry

Year:

2014

Language:

english

File:

PDF, 1.80 MB

english, 2014

36

How to Determine the Size of Folding Nuclei of Protofibrils from the Concentration Dependence of the Rate and Lag-Time of Aggregation. I. Modeling the Amyloid Protofibril Formation

Dovidchenko, Nikita V., Finkelstein, Alexey V., Galzitskaya, Oxana V.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 842 KB

english, 2014

37

The Ising model for prediction of disordered residues from protein sequence alone

Lobanov, Michail Yu, Galzitskaya, Oxana V

Journal:

Physical Biology

Year:

2011

Language:

english

File:

PDF, 837 KB

english, 2011

38

Cunning Simplicity of a Stoichiometry Driven Protein Folding Thesis

Galzitskaya, Oxana V., Lobanov, Michael Yu., Finkelstein, Alexey V.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 349 KB

english, 2011

39

Computer simulation of secondary structure folding of random and ‘‘edited’’ RNA chains

Galzitskaya, Oxana V., Finkelstein, Alexei V.

Journal:

The Journal of Chemical Physics

Year:

1996

Language:

english

File:

PDF, 361 KB

english, 1996

40

Mechanical stability analysis of the protein L immunoglobulin-binding domain by full alanine screening using molecular dynamics simulations

Glyakina, Anna V., Likhachev, Ilya V., Balabaev, Nikolay K., Galzitskaya, Oxana V.

Journal:

Biotechnology Journal

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

41

Cell communication using intrinsically disordered proteins: what can syndecans say?

Leonova, Elena I., Galzitskaya, Oxana V.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 6.42 MB

english, 2015

42

SEARCH FOR FOLDING INITIATION SITES FROM AMINO ACID SEQUENCE

GALZITSKAYA, OXANA V.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 282 KB

english, 2008

43

IS IT POSSIBLE TO PREDICT AMYLOIDOGENIC REGIONS FROM SEQUENCE ALONE?

GALZITSKAYA, OXANA V., GARBUZYNSKIY, SERGIY O., YU. LOBANOV, MICHAIL

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2006

Language:

english

File:

PDF, 366 KB

english, 2006

44

PREDICTION OF LOOP REGIONS IN PROTEIN SEQUENCE

DOVIDCHENKO, NIKITA V., BOGATYREVA, NATALYA S., GALZITSKAYA, OXANA V.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 972 KB

english, 2008

45

TREND OF AMINO ACID COMPOSITION OF PROTEINS OF DIFFERENT TAXA

BOGATYREVA, NATALYA S., FINKELSTEIN, ALEXEI V., GALZITSKAYA, OXANA V.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2006

Language:

english

File:

PDF, 1.03 MB

english, 2006

46

Coupling between Properties of the Protein Shape and the Rate of Protein Folding

Ivankov, Dmitry N., Bogatyreva, Natalya S., Lobanov, Michail Yu, Galzitskaya, Oxana V., Levitt, Michael

Journal:

Year:

2009

Language:

english

File:

PDF, 565 KB

english, 2009

47

Repeats are one of the main characteristics of RNA-binding proteins with prion-like domains

Galzitskaya, Oxana V.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 5.65 MB

english, 2015

48

A COMPARATIVE ANALYSIS OF FOLDING PATHWAYS OF THERMOPHILIC AND MESOPHILIC PROTEINS BY MONTE CARLO SIMULATIONS

GLYAKINA, ANNA V., GALZITSKAYA, OXANA V.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.71 MB

english, 2010

49

COMPACTNESS DETERMINES PROTEIN FOLDING TYPE

GALZITSKAYA, OXANA V., BOGATYREVA, NATALYA S., IVANKOV, DMITRY N.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 321 KB

english, 2008

50

Library of Disordered Patterns in 3D Protein Structures

Lobanov, Michail Yu., Furletova, Eugeniya I., Bogatyreva, Natalya S., Roytberg, Michail A., Galzitskaya, Oxana V., Simon, István

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 2.10 MB

english, 2010